KEGG   Aliivibrio fischeri ES114: VF_A0151
Entry
VF_A0151          CDS       T00236                                 
Symbol
rhlE
Name
(GenBank) RNA helicase
  KO
K11927  ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
Organism
vfi  Aliivibrio fischeri ES114
Pathway
vfi03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:vfi00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    VF_A0151 (rhlE)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vfi03019]
    VF_A0151 (rhlE)
Enzymes [BR:vfi01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     VF_A0151 (rhlE)
Messenger RNA biogenesis [BR:vfi03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     VF_A0151 (rhlE)
SSDB
Motif
Pfam: DEAD Helicase_C ResIII AAA_19 P-loop_SecA CMS1 ERCC3_RAD25_C AAA_22
Other DBs
NCBI-ProteinID: AAW87221
UniProt: Q5E175
Position
II:166790..168292
AA seq 500 aa
MGFTSLGLSAPILKAVEEQGYSTPSPIQLQAIPAVIEGKDVMAAAQTGTGKTAGFTLPLL
ERLSNGPKRKFNQVRALVLTPTRELAAQVHESVEKYSKNLPLTSDVVFGGVKVNPQMQRL
RRGVDVLVATPGRLLDLANQNAIKFDQLEILVLDEADRMLDMGFIHDIKKILAKLPKNRQ
NLLFSATFSDEIRQLAKGLVKDPVEISVAKRNTTAETVEQSVYVMDKGRKPKVLTKLIKD
NDWKQVLVFSKTKHGANRLAKTLEEKGVSAAAIHGNKSQGARTKALANFKSGQVRVLVAT
DIAARGLDIEQLPQVINVDLPKVPEDYVHRIGRTGRAGATGKAISFVSEDEAKELFAIER
LIQKVLPRHVLEGFEPVNKVPESKLDTRPIKPKKPKKPKAPRVEHKDGQRSGENRNGNKQ
GAKQGQKPATKRTPTNNPSGKKEGTDSDKKKRPFSGKPKTKGTGENRGNGSNFGKSKSTP
KSDVKPRRQGPRPARKPKAN
NT seq 1503 nt   +upstreamnt  +downstreamnt
atgggttttacctctctgggcttatctgcccctattttaaaagctgtagaagaacaaggt
tatagcacgccttcaccaattcaattacaagcaattccagcagtaattgaaggcaaggat
gttatggctgctgcacagacagggacaggtaaaacagcaggtttcacattacctctattg
gagcgtttatcgaacggtccaaagcgtaagtttaatcaagttcgtgcgttagtattaacg
cctacacgtgagttagctgcgcaagtacacgaaagtgttgagaagtatagtaagaaccta
ccactgacttctgatgtggtttttggtggcgtaaaagtgaatccacaaatgcagcgtttg
cgtcgtggtgtggacgttttggtagcaacaccgggtcgtttactggatcttgccaatcaa
aatgcgattaagtttgatcaattagaaattcttgttttggatgaagctgaccgtatgtta
gatatgggctttattcatgatattaaaaaaatcttagctaagcttcctaaaaaccgtcaa
aatttgcttttttctgcaacgttttcagatgagatccgtcaattagcaaaagggctagtg
aaagatcctgttgagatttcagtagctaaacgtaacacaacggctgaaacagtagagcaa
tcagtttatgtaatggataaaggccgtaaacctaaagtacttactaaactgattaaagat
aatgattggaagcaagttttagtctttagtaaaactaagcatggtgcaaaccgtcttgca
aaaacactagaagagaagggtgtaagtgctgcagcaattcatggtaataagagccaaggt
gcgcgtactaaagcattagcaaactttaagagtggtcaagtacgagtacttgtagcgacg
gatattgcagcgcgtggcttggatatcgagcaattgcctcaagttattaacgttgattta
ccaaaagtacctgaagattatgttcaccgtattggtcgtacaggtcgtgctggtgcaacg
ggtaaagccatttcttttgtgagcgaagatgaagcgaaagaattgtttgctattgaacgt
ttgattcaaaaagtactgcctcgccatgtgttagaaggtttcgagccagttaataaagta
ccagaatcaaaactggatactcgcccgatcaaaccgaaaaaacctaagaagccaaaagca
ccaagagttgaacataaagatggtcagcgttcaggtgaaaatcgcaatggcaacaaacaa
ggcgcaaaacaaggtcaaaagccagcgacaaaacgtactcctacaaataatccatcaggt
aaaaaagaaggtacggattcggataaaaaaaagcgtccattttctggtaaacctaaaact
aaaggaactggcgaaaatcgcggtaatggcagtaactttggtaaatcaaaatctactcca
aaatcggatgtaaaaccacgtcgtcaaggtccacgaccagcacgtaaaccaaaagcaaac
tga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (24)   
   KEGG ORTHOLOGY (1)   
   RefGene (21)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (39)   

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